Scott Lab: Hammerhead Ribozyme



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The Hammerhead Ribozyme

The hammerhead ribozyme is a small catalytic RNA that was discovered in 1986, and William Scott began structural studies on it in 1987 as a graduate student with Sung-Hou Kim at Berkeley, and continued to do so with Aaron Klug (MRC, Cambridge) as a postdoc. David McKay and coworkers at Stanford published the first structure in 1994, which was that of a 'minimal' hammerhead RNA enzyme strand bound to an all-DNA substrate analogue. In 1995, Scott, Finch and Klug published an all-RNA minimal hammerhead ribozyme, and subsequently our group has worked on obtaining pre-catalytic intermediate and product structures of the minimal hammerhead.

After working with the minimal construct for many years, the hammerhead ribozyme community finally realized in 2003 that a 'full-length' hammerhead construct that contains a crucial set of tertiary contacts distant from the active site enhances the catalytic prowess of the hammerhead by nearly 1000-fold. Recently, we solved its structure. The structure reveals how tertiary contacts distant from the active site prime the ribozyme for catalysis. Click here or on the the title under the ribbon image above to learn more about this structure and to access additional links and resources.





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