List of bioinformatics packages in fink
From OS X Scientific Computing
- amigos - Outputs tables of torsion angles from RNA PDB files
- arb - Phylogeny and sequence data management
- babel - Molecular modelling file converter
- clustalw - ClustalW Multiple Sequence Alignment Program
- emboss - Molecular Biology Open Software Suite
- emboss-kaptain - Kaptain grammars for EMBOSS
- freehelix - Nucleic acid helix analysis program
- ghemical - Molecular modelling environment for GNOME
- gopenmol - Molecular visualization and analysis program
- hmmer - Profile HMMs for biological sequence analysis
- infernal - RNA secondary structure alignments
- mead - Molecular electrostatics calculation
- mmtk - Python-based Molecular Modelling Toolkit
- namot - Nucleic Acid MOdelling Tool
- openbabel - Project designed to pick up where Babel left off
- phase - PH ylogenetics And Sequence Evolution Package
- phylip - Package of programs for inferring phylogenies
- pymol - Molecular graphics system [Also available as a native OS X program]
- python-biopython - Python tools for computational biology
- rasmol - Molecular graphics visualisation tool
- rasmol-8bit - Molecular graphics visualisation tool
- rnabob - Fast RNA motif/pattern searcher
- rnamotif - RNA database search for secondary structure motifs
- rsearch - RNA database search with structure queries
- scientificpython - Python modules useful for scientific computing
- scientificpython-py23 - Python modules useful for scientific computing
- scipy-py22 - Scientific tools for Python2.2
- scipy-py23 - Scientific tools for Python
- snns - Software Simulator for Neural Networks
- tcoffee - T-Coffee Multiple Sequence Alignment Program
- tinker - TINKER molecular modeling software package
- xdrawchem - Chemical drawing
