Other self-contained installs

From OS X Scientific Computing

1 Installing a Coot stand-alone pre-compiled intel binary
- 1.1 Older:
- 1.2 Directions:
2 Installing a Coot stand-alone pre-compiled ppc binary
3 If you absolutely insist on moving it
4 Coot Auto-Opener
5 OLD: Installing a Coot stand-alone pre-compiled "universal" binary

Installing a Coot stand-alone pre-compiled intel binary

Coot-0.4.1 (January 03, 2008)

md5sum: d74f79ced6ab9294b3ec37dc0de5dbef

[edit]

Older:

Coot 0.4-pre-2-622 (Dec 30, 2007)

Intel -- works on both 10.4 and 10.5

md5sum: 81561ef7cbac674084247fc444c89d4b

[edit]

Directions:

For the most recent coot-0.5pre, follow the directions on its page.

For the 0.4.x releases, ...

If you unpack this at root level, it will go into /usr/local/coot, i.e.,

mv coot*.tgz /.
cd /
tar xvfz coot*.tgz
rm coot*.tgz

This was compiled in /usr/local/coot on 10.4 intel. To invoke it, first define the following function (bash or zsh):

function coot { COOT_REFMAC_LIB_DIR='/usr/local/coot/share/coot/lib'  PATH=/usr/local/coot/bin:$PATH  /usr/local/coot/bin/coot "$@" ; }

and then just invoke with

coot

If you use tcsh, you can't define a function, so try an alias such as

alias coot   "setenv COOT_REFMAC_LIB_DIR /usr/local/coot/share/coot/lib ; setenv PATH /usr/local/coot/bin:$PATH ; /usr/local/coot/bin/coot "

I compiled it using fink's tools and then tried to remove as much cruft as possible. It is meant to be stand-alone.

It works on 10.4 and 10.5 (at least when I tested it).

[edit]

Installing a Coot stand-alone pre-compiled ppc binary

[edit]

New:

Coot 0.4-pre-2-662 (Dec 30, 2007)

ppc -- works on both 10.4 and 10.5

md5sum: 57ec4dc021c63bb554983b6d630b1453

[edit]

Older:

Coot 0.4-pre-2-662 (Dec 30, 2007)

ppc -- works on both 10.4 and 10.5

md5sum: bc476e4e17fd1569ec13376005195d7b

[edit]

Directions:

If you unpack this at root level, it will go into /usr/local/coot, i.e.,

mv coot*.tgz /.
cd /
tar xvfz coot*.tgz
rm coot*.tgz

This was compiled in /usr/local/coot on 10.4 intel. To invoke it, first define the following function (bash or zsh):

function coot { COOT_REFMAC_LIB_DIR='/usr/local/coot/share/coot/lib'  PATH=/usr/local/coot/bin:$PATH  /usr/local/coot/bin/coot "$@" ; }

and then just invoke with

coot

If you use tcsh, you can't define a function, so try an alias such as

alias coot   "setenv COOT_REFMAC_LIB_DIR /usr/local/coot/share/coot/lib ; setenv PATH /usr/local/coot/bin:$PATH ; /usr/local/coot/bin/coot "

I compiled it using fink's tools and then tried to remove as much cruft as possible. It is meant to be stand-alone.

It works on 10.4 and 10.5 (at least when I tested it).

[edit]

If you absolutely insist on moving it

Edit and invoke with this coot.zsh shell script

[edit]

Coot Auto-Opener

You can download my CootAutoOpener applet. It allows you to double-click an icon to open the version of coot installed in /usr/local/coot/bin/coot, i.e., the above stand-alone installs. It should also allow you to drag a file to the icon and open it that way, loading the file, and it will run coot from the directory in which that file is located. I made it with a shell-script wrapper called Platypus.

[edit]